Helen, I wonder whether, by treating so thoroughly and so promptly, your stock are not developing a natural immunity to this infection?
With some worms - cocci for instance - our vet says it's best, if possible, to let the lambs gain a little bit of exposure before dosing them for it, otherwise the keeping ewe lambs don't build their own immunity to it, as we've knocked 'em all off before they've had a chance to get a challenge from them.
Same may apply to the pink eye infection, and the reason other flocks round about don't have such a huge problem is that the hoggs or lambs get it, build immunity, and don't get it again in subsequent years.
Just a thought.