A few thoughts and factlets :
You don't need to wait for shearing to discover if a sheep is thin as you suspect. Learn to assess their body condition, and check it regularly.
The ground in the entire UK is deficient in copper, cobalt and selenium, and so will your livestock be if they don't get some supplementation. There will be minerals in concentrate mixes, and there are minerals in the licks, but many of us - and most farmers and farm vets - find that nothing really beats a regular - once or twice a year - drench with a good quality chelated mineral drench. Chelated minerals stay in the system for weeks, even months, whereas our vet described the Crystalix licks as "sweeties - like barley sugars".
Lots of livestock get by with low mineral levels. But when there is another problem about, they will be less resilient to it. As with many things that sheep can get, you may see little sign of a problem in the flock, but then one sheep will get something and be hit quite hard by it. So just making sure they have good minerals can help them weather any other problems that may arise.
I have farmed on flukey ground and ground which is not nornally flukey and here are some things I've learned about fluke.
- the lifecycle is complex and the occurrence and seasonality of the infections can be affected by the weather, so that a farm which has always drenched for fluke from October to March but not April through September may find it gets an outbreak of fluke in the summer in certain years, and a farm which has never had a fluke problem may get fluke at any time if the weather patterns have created the optimum conditions for it. Good agri vets do newsletters - read them for early warnings.
- when a farm gets an outbreak, very few sheep will show any clinical signs. We had 520+ ewes and would see maybe three to five presenting clinically - but others can be affected, just not showing clinical signs. The vet said that by the time you see the classic bottle jaw, the sheep is almost certainly a goner because it will have suffered longterm damage.
- (you clearly know this already, but for completeness) faecal egg counts can give you a +ve for fluke but they aren't always shedding, so a -ve cannot be taken to mean fluke is not present. One thing you can do if you breed and send sheep to slaughter is to ask the abattoir to mention to you if they are seeing sligns of fluke in the livers of your sheep. (It is so common that many will not mention it unless you specifically ask.)