Eggs don't absorb humidity they lose it Suziequeue. The water content in the white is slowly lost leaving an increasing air sac and the rate of loss has to be a steady one.
I wouldn't worry that much about the humidity reading. Humidity meters are not that accurate anyway -just gives you a rough idea. I wouldn't close the vent completely as you need some air replacement I read.
You certainly shouldn't need both troughs full. With both troughs full you should be near the 65% needed at hatching? I suspect that your meter is wildly inaccurate. In England, with the air being very humid anyway, you shouldn't need to put any water in at this stage. Most people seem to run the incubator 'dry' for the first 18 days. It depends on the humidity where you have the incubator and perhaps you should check that. 80% is the norm. Over here it can be 20% and it is essential to fill one water chamber.